[1] V. Ntziachristos, J. Ripoll, L. V. Wang, R. Weisslder, "Looking and listening to light: The evolution of whole body photonic imaging," Nat. Biotechnol. 23, 313–320 (2005).
[2] J. Tian, J. Bai, X. Yan, S. Bao, Y. Li, W. Liang, X. Yang, "Multimodality molecular imaging," IEEE Eng. Med. Biol. Mag. 27, 48–57 (2008).
[3] Y. Lin, W. C. Barber, J. S. Iwanczyk, W. W. Roeck, O. Nalcioglu, G. Gulsen, "Quantitative fluorescence tomography using a trimodality system: In vivo validation," J. Biomed. Opt. 15, 040503 (2010).
[4] X. Song, D. Wang, N. Chen, J. Bai, H. Wang, "Reconstruction for free-space fluorescence tomography using a novel hybrid adaptive finite element algorithm," Opt. Express 15, 18300–18317 (2007).
[5] D. Han, J. Tian, K. Liu, J. Feng, B. Zhang, X. Ma, C. Qin, "Sparsity promoting tomographic fluorescence imaging with simplified spherical harmonics approximation," IEEE Trans. Biomed. Eng. 57, 2564–2567 (2010).
[6] Y. Lv, B. Zhu, H. Shen, J. C. Rasmussen, G. Wang, E. M. Sevick-Muraca, "A parallel adaptive finite element simplified spherical harmonics approximation solver for frequency domain fluorescence molecular imaging," Phys. Med. Biol. 55, 4625–4645 (2010).
[7] L. V. Wang, H. Wu, Biomedical Optics: Principles and Imaging, Wiley-Interscience, USA (2007).
[8] X. Wang, X. Cao, B. Zhang, F. Liu, J. W. Luo, J. Bai, "A hybrid reconstruction algorithm for fluorescence tomography using Kirchhoff approximation and finite element method," Med. Biol. Eng. Comput. 51, 7–17 (2013).
[9] A. D. Klose, "The forward and inverse problem in tissue optics based on the radiative transfer equation: A brief review," J. Quant. Spectrosc. Radiat. Transf. 111, 1852–1853 (2010).
[10] A. D. Klose, E. W. Larsen, "Light transport in biological tissue based on the simplified spherical harmonics equations," J. Comput. Phys. 220, 441–470 (2006).
[11] A. D. Klose, E. W. Larsen, "Excitation-resolved fluorescence tomography with simplified spherical harmonics equations," Phys. Med. Biol. 56, 443–1469 (2011).
[12] A. X. Cong, "Reconstruction methods for optical molecular tomography," Dissertation, Virginia Polytechnic Institute and State University (2012).
[13] A. Cong, G. Wang, "A finite-element-based reconstruction method for 3D fluorescence tomography," Opt. Express 13, 847–9857 (2005).
[14] S. Kossodo, M. Pickarski, S. A. Lin, A. Gleason, "Dual in vivo quantification of integrin-targeted and protease-activated agents in cancer using fluorescence molecular tomography," Mol. Imaging Biol. 12, 488–499, (2010).
[15] J. C. Baritaux, K. Hassler, M. Unser, "An efficient numerical method for general lp regularization in fluorescence molecular tomography," IEEE Trans. Med. Imaging 29, 1075–1085 (2010).
[16] J. W. Shi, X. Cao, F. Liu, B. Zhang, J. W. Luo, J. Bai, "Greedy reconstruction algorithm for fluorescence molecular tomography by means of truncated singular value decomposition conversion," J. Opt. Soc. Am. A 30, 437–447 (2013).
[17] D. Han, J. Tian, S. Zhu, J. Feng, Ch. Qin, B. Zhang, X. Yang. "A fast reconstruction algorithm for fluorescence molecular tomography with sparsity regularization," Opt. Express 18, 8630–8646 (2010).
[18] R. Han, J. Liang, X. Qu, Y. Hou, N. Ren, J. Mao, J. Tian, "A source reconstruction algorithm based on adaptive hp-FEM for bioluminescence tomography," Opt. Express 17, 14481–14494 (2009).
[19] H. Yi, D. Chen, X. Qu, K. Peng, X. Chen, Y. Zhou, J. Tian, J. Liang, "Multilevel, hybrid regularization method for reconstruction of fluorescent molecular tomography," Appl. Opt. 51, 975–986 (2012).
[20] I. Babuska, B. Q. Guo, "The h, p and h-p version of the finite element method: Basis theory and applications," Adv. Eng. Softw. 15, 159–174 (1992).
[21] J. M. Melenk, hp-Finite Element Methods for Singular Perturbations, Springer-Verlag, Berlin (2002).
[22] C. Schwab, p- and hp-Finite Element Methods: Theory and Applications in Solid and Fluid Mechanics, Numerical Mathematics and Scientific Computation, Clarendon Press, Oxford (1998).
[23] X. He, J. Liang, X. Wang, J. Yu, X. Qu, X. Wang, Y. Hou, D. Chen, F. Liu, J. Tian, "Sparse reconstruction for quantitative bioluminescence tomography based on the incomplete variables truncated conjugate gradient method," Opt. Express 18, 24825–24841 (2010).
[24] W. Q. Yang, D. M. Spink, T. A. York, H. McCann, "An image-reconstruction algorithm based on Landweber's iteration method for electrical-capacitance tomography," Meas. Sci. Technol. 10, 1065–1069 (1999).
[25] B. Dogdas, D. Stout, A. F. Chatziioannou, R. M. Leahy, "Digimouse: A 3D whole body mouse atlas from CT and cryosection data," Phys. Med. Biol. 52, 577–587 (2007)
[26] G. Alexandrakis, F. R. Rannou, A. F. Chatziioannou, "Tomographic bioluminescence imaging by use of a combined optical-PET (OPET) system: A computer simulation feasibility study, " Phys. Med. Biol. 50, 4225–4241 (2005).
[27] D. Wang, X. Liu, Y. Chen, J. Bai, "A novel finite element based algorithm for fluorescence molecular tomography of heterogeneous media," IEEE Trans. Inf. Technol. Biomed. 13, 766–773 (2009).
[28] Y. Lin, H. Gao, O. Nalcioglu, G. Gulsen, "Fluorescence diffuse optical tomography with functional and anatomical a priori information: Feasibility study," Phys. Med. Biol. 52, 5569–5585 (2007).