[1] B. Swynghedauw, “Molecular mechanisms of myocardial remodeling,” Physiol. Rev. 79, 215 (1999).
[2] P. Helm, L. Younes, M. Beg, D. Ennis, C. Leclercq, O. Faris, E. McVeigh, D. Kass, M. Miller, R. Winslow, “Evidence of structural remodeling in the dyssynchronous failing heart,” Circ. Res. 98, 125 (2006).
[3] J. Garot, O. Pascal, B. Diebold, G. Derumeaux, B. Gerber, J. Dubois-Rande, J. Lima, P. Gueret, “Alterations of systolic left ventricular twist after acute myocardial infarction,” Am. J. Physiol. Heart Circ. Physiol. 282, H357 (2002).
[4] N. Ghosh, M. Wood, I. Vitkin, “Mueller matrix decomposition for extraction of individual polarization parameters from complex turbid media exhibiting multiple scattering, optical activity, and linear birefringence,” J. Biomed. Opt. 13, 044036 (2008).
[5] J. De Boer, T. Milner, M. van Gemert, J. Nelson, “Two-dimensional birefringence imaging in biological tissue by polarization-sensitive optical coherence tomography,” Opt. Lett. 22, 934–936 (1997).
[6] B. Park, C. Saxer, S. Srinivas, J. Nelson, J. de Boer, “In vivo burn depth determination by high-speed fiber-based polarization sensitive optical coherence tomography,” J. Biomed. Opt. 6, 474 (2001).
[7] Y. Yasuno, S. Makita, Y. Sutoh, M. Itoh, T. Yatagai, “Birefringence imaging of human skin by polarization-sensitive spectral interferometric optical coherence tomography,” Opt. Lett. 27, 1803– 1805 (2002).
[8] C. Wu, Y. Wang, L. Lu, C. Sun, C. Lu, M. Tsai, C. Yang, “Tissue birefringence of hypercholesterolemic rat liver measured with polarization-sensitive optical coherence tomography,” J. Biomed. Opt. 12, 064022 (2007).
[9] J. De Boer, T. Milner, J. Nelson, “Determination of the depth-resolved Stokes parameters of light backscattered from turbid media by use of polarization-sensitive optical coherence tomography,” Opt. Lett. 24, 300–302 (1999).
[10] S. Jiao, G. Yao, L. Wang, “Depth-resolved twodimensional Stokes vectors of backscattered light and Mueller matrices of biological tissue measured with optical coherence tomography,” Appl. Opt. 39, 6318–6324 (2000).
[11] A. Pravdin, D. Yakovlev, A. Spivak, V. Tuchin, “Mapping of optical properties of anisotropic biological tissues,” in Proceedings of SPIE, Vol. 5695, p. 303 (2005).
[12] M. Wood, N. Ghosh, M. A. Wallenburg, S. Li, R. Weisel, B. Wilson, R. Li, A. Vitkin, “Polarization birefringence measurements for characterizing the myocardium, including healthy, infarcted, and stem cell treated regenerating cardiac tissues,” (submitted to J. Biomed. Opt.) (2010).
[13] B. Liu, M. Harman, S. Giattina, D. Stamper, C. Demakis, M. Chilek, S. Raby, M. Brezinski, “Characterizing of tissue microstructure with single-detector polarization-sensitive optical coherence tomography,” Appl. Opt. 45, 4464–4479 (2006).
[14] B. Saleh, M. Teich, Fundamentals of Photonics, Chapter 6. Wiley-Interscience (1991).
[15] N. Ghosh, M. Wood, S. Li, R. Weisel, B. Wilson, R. Li, I. Vitkin, “Mueller matrix decomposition for polarized light assessment of complex turbid media such as biological tissues,” J. Biophotonics 2(3), 145–156 (2009).
[16] P. Farahmand, T. Lai, R. Weisel, S. Fazel, T. Yau, P. Menasche, R. Li, “Skeletal myoblasts preserve remote matrix architecture and global function when implanted early or late after coronary ligation into infarcted or remote myocardium,” Circulation 118, S130 (2008).
[17] D. Le Bihan, P. van Zijl, “From the diffusion coefficient to the diffusion tensor,” NMR in Biomed. 15, 431–434 (2002).
[18] A. Holmes, D. Scollan, R. Winslow, “Direct histological validation of diffusion tensor MRI in formaldehyde-fixed myocardium,” Magn. Reson. Med. 44, 157–161 (2000).
[19] M. Wu, W. Tseng, M. Su, C. Liu, K. Chiou, V. Wedeen, T. Reese, C. Yang, “Diffusion tensor magnetic resonance imaging mapping the fiber architecture remodeling in human myocardium after infarction: Correlation with viability and wall motion,” Circulation 114, 1036 (2006).
[20] E. Wu, Y. Wu, H. Tang, J. Wang, J. Yang, M. Ng, E. Yang, C. Chan, S. Zhu, C. Lau et al., “Study of myocardial fiber pathway using magnetic resonance diffusion tensor imaging,” Magn. Reson. Imaging 25, 1048–1057 (2007).
[21] G. Clarke, S. Eidt, L. Sun, G. Mawdsley, J. Zubovits, M. Yaffe, “Whole-specimen histopathology: A method to produce whole-mount breast serial sections for 3-d digital histopathology imaging,” Histopathology 50, 232–242 (2007).
[22] P. Helm, H. Tseng, L. Younes, E. McVeigh, R. Winslow, “Ex vivo 3d diffusion tensor imaging and quantification of cardiac laminar structure,” Magn. Reson. Med. 54, 850 (2005).
[23] D. LeBihan, J. Mangin, C. Poupon, C. Clark, S. Pappata, N. Molko, H. Chabriat, “Diffusion tensor imaging: Concepts and applications,” J. Magn. Reson. Imaging 13, 534–546 (2001).
[24] P. Fillard, N. Toussaint, X. Pennec, “Medinria: DTMRI processing and visualization software,” in Similar Tensor Workshop, Vol. 5, p. 7 (2006).
[25] H. Jiang, P. van Zijl, J. Kim, G. Pearlson, S. Mori, “Dtistudio: Resource program for diffusion tensor computation and fiber bundle tracking,” Computer Methods and Programs in Biomedicine 81, 106–116 (2006).
[26] E. Hecht, Optics. Addison-Wesley (2001).
[27] S. Lu, R. Chipman, “Interpretation of Mueller matrices based on polar decomposition,” J. Opt. Soc. Am. A 13, 1106–1113 (1996).
[28] M. Wood, X. Guo, I. Vitkin, “Polarized light propagation in multiple scattering media exhibiting both linear birefringence and optical activity: Monte Carlo model and experimental methodology,” J. Biomed. Opt. 12, 014029 (2007).
[29] N. Ghosh, M. Wood, I. Vitkin, “Influence of the order of the constituent basis matrices on the Mueller matrix decomposition-derived polarization parameters in complex turbid media such as biological tissues,” Opt. Commun. 283, 1200–1208 (2009).
[30] X. Guo, M.Wood, A. Vitkin, “Monte Carlo study of pathlength distribution of polarized light in turbid media,” Opt. Express 15, 1348–1360 (2007).
[31] X. Guo, M. Wood, A. Vitkin, “A Monte Carlo study of penetration depth and sampling volume of polarized light in turbid media,” Opt. Commun. 281, 380–387 (2008).
[32] K. Sch¨oenenberger, B. Colston, D. Maitland, L. Da Silva, M. Everett, “Mapping of birefringence and thermal damage in tissue by use of polarizationsensitive optical coherence tomography,” Appl. Opt. 37, 6026–6035 (1998).
[33] P. Sengupta, V. Krishnamoorthy, J. Korinek, J. Narula, M. Vannan, S. Lester, J. Tajik, J. Seward, B. Khandheria, M. Belohlavek, “Left ventricular form and function revisited: Applied translational science to cardiovascular ultrasound imaging,” J. Am. Soc. Echocardiography 20, 539–551 (2007).
[34] Y. Wu, C. Chan, J. Nicholls, S. Liao, H. Tse, E. Wu, “MR study of the effect of infarct size and location on left ventricular functional and microstructural alterations in porcine models,” J. Magn. Reson. Imaging 29, 305–312 (2009).
[35] B. Wilson, I. Vitkin, D. Matthews, R. Oncology, “The potential of biophotonic techniques in stem cell tracking and monitoring of tissue regeneration applied to cardiac stem cell therapy,” J. Biophotonics 2, 669–681 (2009).