Structured illumination microscopy and its new developments

Jianling Chen; Caimin Qiu; Minghai You; Xiaogang Chen; Hongqin Yang; Shusen Xie

doi:10.1142/s179354581630010x

[1] E. Abbe, "Beitr ge zur Theorie des Mikroskops und der mikroskopischen Wahrnehmung," Arch. Mikrosk. Anat. 9, 413–418 (1873).

[2] S. W. Hell, J. Wichmann, "Breaking the diffraction resolution limit by stimulated emission: Stimulatedemission- depletion fluorescence microscopy," Opt. Lett. 19, 780–782 (1994).

[3] M. G. L. Gustafsson, "Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy," J. Microsc.-Oxford 198, 82–87 (2000).

[4] M. J. Rust, M. Bates, X. Zhuang, "Sub-diffractionlimit imaging by stochastic optical reconstruction microscopy (STORM)," Nat. Methods 3, 793–796 (2006).

[5] E. Betzig, G. H. Patterson, R. Sougrat, O. W. Lindwasser, S. Olenych, J. S. Bonifacino, M. W. Davidson, J. Lippincott-Schwartz, H. F. Hess, "Imaging intracellular fluorescent proteins at nanometer resolution," Science 313, 1642–1645 (2006).

[6] G. H. Patterson, "Fluorescence microscopy below the diffraction limit," Sem. Cell Dev. Biol. 20, 886– 893 (2009).

[7] B. Huang, H. Babcock, X. Zhuang, "Breaking the diffraction barrier: Super-resolution imaging of cells," Cell 143, 1047–1058 (2010).

[8] A. G. Godin, B. Lounis, L. Cognet, "Super-resolution microscopy approaches for live cell imaging," Biophys. J. 107, 1777–1784 (2014).

[9] Y. Hirano, A. Matsuda, Y. Hiraoka, "Recent advancements in structured-illumination microscopy toward live-cell imaging," Microscopy 64, 237– 249 (2015).

[10] R. Heintzmann, T. M. Jovin, C. Cremer, "Saturated patterned excitation microscopy — a concept for optical resolution improvement," J. Opt. Soc. Am. A 19, 1599–1609 (2002).

[11] M. G. L. Gustafsson, "Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution," Proc. Natl. Acad. Sci. USA 102, 13081–13086 (2005).

[12] M. G. L. Gustafsson, L. Shao, P. M. Carlton, C. J. R. Wang, I. N. Golubovskaya, W. Z. Cande, D. A. Agard, J. W. Sedat, "Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination," Biophys. J. 94, 4957–4970 (2008).

[13] R. Heintzmann, C. Cremer, "Laterally modulated excitation microscopy: Improvement of resolution by using a diffraction grating," Proc. SPIE 3568, 185–196 (1999).

[14] M. G. L. Gustafsson, D. A. Agard, J. W. Sedat, "Doubling the lateral resolution of wide-field fluorescence microscopy using structured illumination," Proc. SPIE 3919, 141–150 (2000).

[15] R. Heintzmann, "Saturated patterned excitation microscopy with two-dimensional excitation patterns," Micron 34, 283–291 (2003).

[16] L. Hirvonen, O. Mandula, K. Wicker, R. Heintzmann, "Structured illumination microscopy using photoswitchable fluorescent proteins," Proc. SPIE 6861, 68610L (2008).

[17] E. H. Rego, L. Shao, J. J. Macklin, L. Winoto, G. A. Johansson, N. Kamps-Hughes, M. W. Davidson, M. G. Gustafsson, "Nonlinear structured-illumination microscopy with a photoswitchable protein reveals cellular structures at 50-nm resolution," Proc. Natl. Acad. Sci. USA 109, E135–E143 (2012).

[18] D. Li, L. Shao, B. C. Chen, X. Zhang, M. Zhang, B. Moses, D. E. Milkie, J. R. Beach, J. R. Hammer, M. Pasham, T. Kirchhausen, M. A. Baird, M. W. Davidson, P. Xu, E. Betzig, "Advanced imaging. Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics," Science 349, aab3500 (2015).

[19] M. G. L. Gustafsson, D. A. Agard, J. W. Sedat, "I5M: 3D wide-field light microscopy with better than 100 nm axial resolution," J. Microsc.-Oxford 195, 10–16 (1999).

[20] L. Shao, B. Isaac, S. Uzawa, D. A. Agard, J. W. Sedat, M. G. L. Gustafsson, "I5S: Wide-field light microscopy with 100-nm-scale resolution in three dimensions," Biophys. J. 94, 4971–4983 (2008).

[21] P. Kner, B. B. Chhun, E. R. Griffis, L. Winoto, M. G. L. Gustafsson, "Super-resolution video microscopy of live cells by structured illumination," Nat. Methods 6, 339–342 (2009).

[22] L. M. Hirvonen, K. Wicker, O. Mandula, R. Heintzmann, "Structured illumination microscopy of a living cell," Eur. Biophys. J. 38, 807–812 (2009).

[23] L. Shao, P. Kner, E. H. Rego, M. G. L. Gustafsson, "Super-resolution 3D microscopy of live whole cells using structured illumination," Nat. Methods 8, 1044–1046 (2011).

[24] R. Fiolka, L. Shao, E. H. Rego, M. W. Davidson, M. G. Gustafsson, "Time-lapse two-color 3D imaging of live cells with doubled resolution using structured illumination," Proc. Natl. Acad. Sci. USA 109, 5311–5315 (2012).

[25] E. Chung, D. K. Kim, P. So, "Extended resolution wide-field optical imaging: Objective-launched standing-wave total internal reflection fluorescence microscopy," Opt. Lett. 31, 945–947 (2006).

[26] R. Fiolka, M. Beck, A. Stemmer, "Structured illumination in total internal reflection fluorescence microscopy using a spatial light modulator," Opt. Lett. 33, 1629–1631 (2008).

[27] O. Gliko, W. E. Brownell, P. Saggau, "Fast twodimensional standing-wave total-internal-reflection fluorescence microscopy using acousto-optic deflectors," Opt. Lett. 34, 836–838 (2009).

[28] O. Gliko, D. G. Reddy, W. E. Brownell, P. Saggau, "Development of fast two-dimensional standing wave microscopy using acousto-optic deflectors," Proc. SPIE 6861, 68610B (2008).

[29] B. Chang, L. Chou, Y. Chang, S. Chiang, "Isotropic image in structured illumination microscopy patterned with a spatial light modulator," Opt. Express 17, 14710–14721 (2009).

[30] L. Wang, M. C. Pitter, M. G. Somekh, "Wide-field high-resolution structured illumination solid immersion fluorescence microscopy," Opt. Lett. 36, 2794–2796 (2011).

[31] D. Dan, M. Lei, B. L. Yao, W. Wang, M. Winterhalder, A. Zumbusch, Y. J. Qi, L. Xia, S. H. Yan, Y. L. Yang, P. Gao, T. Ye, W. Zhao, "DMD-based LED-illumination super-resolution and optical sectioning microscopy," Sci. Rep.-UK 3, 1116 (2013).

[32] A. G. York, S. H. Parekh, D. Dalle Nogare, R. S. Fischer, K. Temprine, M. Mione, A. B. Chitnis, C. A. Combs, H. Shroff, "Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy," Nat. Methods 9, 749–754 (2012).

[33] E. Mudry, K. Belkebir, J. Girard, J. Savatier, E. Le Moal, C. Nicoletti, M. Allain, A. Sentenac, "Structured illumination microscopy using unknown speckle patterns," Nat. Photonics 6, 312–315 (2012).

[34] T. Kim, D. Gweon, J. H. Lee, "Enhancement of fluorescence confocal scanning microscopy lateral resolution by use of structured illumination," Meas. Sci. Technol. 20, 055501 (2009).

[35] O. Mandula, M. Kielhorn, K. Wicker, G. Krampert, I. Kleppe, R. Heintzmann, "Line scan — structured illumination microscopy super-resolution imaging in thick fluorescent samples," Opt. Express 20, 24167– 24174 (2012).

[36] B. Littleton, K. Lai, D. Longstaff, V. Sarafis, P. Munroe, N. Heckenberg, H. Rubinsztein-Dunlop, "Coherent super-resolution microscopy via laterally structured illumination," Micron 38, 150–157 (2007).

[37] K. M. Hajek, B. Littleton, D. Turk, T. J. McIntyre, H. Rubinsztein-Dunlop, "A method for achieving super-resolved widefield CARS microscopy," Opt. Express 18, 19263–19272 (2010).

[38] B. Chang, S. H. Lin, L. Chou, S. Chiang, "Subdiffraction scattered light imaging of gold nanoparticles using structured illumination," Opt. Lett. 36, 4773–4775 (2011).

[39] S. Chowdhury, A. Dhalla, J. Izatt, "Structured oblique illumination microscopy for enhanced resolution imaging of nonfluorescent, coherently scattering samples," Biomed. Opt. Express 3, 1841–1854 (2012).

[40] J. L. Chen, Y. Xu, X. H. Lv, X. M. Lai, S. Q. Zeng, "Super-resolution differential interference contrast microscopy by structured illumination," Opt. Express 21, 112–121 (2013).

[41] J. L. Chen, X. H. Lv, S. Q. Zeng, "Doubling the resolution of spatial-light-modulator-based differential interference contrast microscopy by structured illumination," Opt. Lett. 38, 3219–3222 (2013).