• Journal of Innovative Optical Health Sciences
  • Vol. 14, Issue 6, 2150021 (2021)
Zhenzhen Li1, Xiujuan Zhang2、3, Chengui Xiao4, Da Chen1、5, Shushi Huang2, Pengfei Zhang1、*, and Guiwen Wang2
Author Affiliations
  • 1School of Precision Instruments and Optoelectronics Engineering Tianjin University, Tianjin 300072, China
  • 2Guangxi Key Laboratory of Marine Natural Products and Combinatorial Biosynthesis Chemistry Guangxi Academy of Sciences 98 Daling Road, Nanning, Guangxi 530007, China
  • 3College of Physics Science and Technology Guangxi Normal University, 15 Yucai Road Guilin, Guangxi 541004, China
  • 4Food Inspection and Quarantine Technology Center of Shenzhen Customs Shenzhen Academy of Inspection and Quarantine Shenzhen, Guangdong 518045, China
  • 5Center for Aircraft Fire and Emergency Civil Aviation University of China, Tianjin 300300, China
  • show less
    DOI: 10.1142/s1793545821500218 Cite this Article
    Zhenzhen Li, Xiujuan Zhang, Chengui Xiao, Da Chen, Shushi Huang, Pengfei Zhang, Guiwen Wang. Combination of multi-focus Raman spectroscopy and compressive sensing for parallel monitoring of single-cell dynamics[J]. Journal of Innovative Optical Health Sciences, 2021, 14(6): 2150021 Copy Citation Text show less
    References

    [1] K. Kong, C. Kendall, N. Stone, I.Notingher, "Raman spectroscopy for medical diagnostics—From in-vitro biofluid assays to in-vivo cancer detection," Adv. Drug Deliv. Rev. 89, 121–134 (2015).

    [2] C. H. Camp, Jr., Y. J. Lee, J. M. Heddleston, C. M. Hartshorn, A. R. H. Walker, J. N. Rich, J. D. Lathia, M. T. Cicerone, "High-speed coherent Raman fingerprint imaging of biological tissues," Nat. Photon. 8, 627 (2014).

    [3] S. Schlücker, "Surface-enhanced Raman spectroscopy: Concepts and chemical applications," Angew. Chem. Int. Ed. 53(19), 4756–4795 (2014).

    [4] D. Chen, T. Wang, Y. Ma, G. Wang, Q. Kong, P. Zhang, R. Li, "Rapid characterization of heavy metals in single microplastics by laser induced breakdown spectroscopy," Sci. Total. Environ. 743, 140850 (2020).

    [5] C. Xie, J. Mace, M. A. Dinno, Y. Q. Li, W. Tang, R. J. Newton, P. J. Gemperline, "Identification of single bacterial cells in aqueous solution using confocal laser tweezers Raman spectroscopy," Anal. Chem. 77(14), 4390–4397 (2005).

    [6] R. Liu, Z. Mao, D. L. Matthews, C.-S. Li, J. W. Chan, N. Satake, "Novel single-cell functional analysis of red blood cells using laser tweezers Raman spectroscopy: Application for sickle cell disease," Exp. Hematol. 41(7), 656–661.e1 (2013).

    [7] S. Casabella, P. Scully, N. Goddard, P. Gardner, "Automated analysis of single cells using laser tweezers Raman spectroscopy," Analyst 141(2), 689–696 (2016).

    [8] K. S. Lee, M. Palatinszky, F. C. Pereira, J. Nguyen, V. I. Fernandez, A. J. Mueller, F. Menolascina, H. Daims, D. Berry, M. Wagner, "An automated Raman-based platform for the sorting of live cells by functional properties," Nat. Microbiol. 4(6), 1035– 1048 (2019).

    [9] W. Lu, X. Chen, L. Wang, H. Li, Y. V. Fu, "Combination of an artificial intelligence approach and laser tweezers Raman spectroscopy for microbial identification," Anal. Chem. 92(9), 6288–6296 (2020).

    [10] C.-S. Ho, N. Jean, C. A. Hogan, L. Blackmon, S. S. Je?rey, M. Holodniy, N. Banaei, A. A. Saleh, S. Ermon, J. Dionne, "Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning," Nat. Commun. 10(1), 1–8 (2019).

    [11] C. Xie, C. Goodman, M. A. Dinno, Y.-Q. Li, "Realtime Raman spectroscopy of optically trapped living cells and organelles," Opt. Exp. 12(25), 6208–6214 (2004).

    [12] P. Zhang, L. Kong, G. Wang, P. Setlow, Y.-Q. Li, "Monitoring the wet-heat inactivation dynamics of single spores of Bacillus species by using Raman tweezers, differential interference contrast microscopy, and nucleic acid dye fluorescence microscopy," Appl. Environ. Microbiol. 77(14), 4754–4769 (2011).

    [13] S. Wang, B. Setlow, P. Setlow, Y.-Q. Li, "Uptake and levels of the antibiotic berberine in individual dormant and germinating Clostridium difficile and Bacillus cereus spores as measured by laser tweezers Raman spectroscopy," J. Antimicrob. Chemother. 71(6), 1540–1546 (2016).

    [14] P. Zhang, L. Kong, P. Setlow, Y.-Q. Li, "Multipletrap laser tweezers Raman spectroscopy for simultaneous monitoring of the biological dynamics of multiple individual cells," Opt. Lett. 35(20), 3321– 3323 (2010).

    [15] R. Liu, D. S. Taylor, D. L. Matthews, J. W. Chan, "Parallel analysis of individual biological cells using multifocal laser tweezers Raman spectroscopy," Appl. Spectrosc. 64(11), 1308–1310 (2010).

    [16] M. Okuno, H.-O. Hamaguchi, "Multifocus confocal Raman microspectroscopy for fast multimode vibrational imaging of living cells," Opt. Lett. 35(24), 4096–4098 (2010).

    [17] S. Yabumoto, H.-O. Hamaguchi, "Tilted two-dimensional array multifocus confocal Raman microspectroscopy," Anal. Chem. 89(14), 7291–7296 (2017).

    [18] P. Zhang, L. Kong, G. Wang, M. Scotland, S. Ghosh, B. Setlow, P. Setlow, Y.-Q. Li, "Analysis of the slow germination of multiple individual superdormant Bacillus subtilis spores using multifocus Raman microspectroscopy and differential interference contrast microscopy," J. Appl. Microbiol. 112(3), 526–536 (2012).

    [19] L. Kong, J. Chan, "A rapidly modulated multifocal detection scheme for parallel acquisition of Raman spectra from a 2D focal array," Anal. Chem. 86(13), 6604–6609 (2014).

    [20] H. Ji, V. Nava, Y. Yang, J. W. Chan, "Multifocal 1064 nm Raman imaging of carbon nanotubes," Opt. Lett. 45(18), 5132–5135 (2020).

    [21] B. M. Davis, A. J. Hemphill, D. Cebeci Malta?, M. A. Zipper, P. Wang, D. Ben-Amotz, "Multivariate hyperspectral Raman imaging using compressive detection," Anal. Chem. 83(13), 5086–5092 (2011).

    [22] D. S. Wilcox, G. T. Buzzard, B. J. Lucier, P. Wang, D. Ben-Amotz, "Photon level chemical classification using digital compressive detection," Anal. Chim. Acta 755, 17–27 (2012).

    [23] F. Soldevila, J. Dong, E. Tajahuerce, S. Gigan, H. B. de Aguiar, "Fast compressive Raman bio-imaging via matrix completion," Optica 6(3), 341–346 (2019).

    [24] J. V. Thompson, J. N. Bixler, B. H. Hokr, G. D. Noojin, M. O. Scully, V. V. Yakovlev, "Single-shot chemical detection and identification with compressed hyperspectral Raman imaging," Opt. Lett. 42(11), 2169–2172 (2017).

    [25] P. Zhang, G. Wang, X. Zhang, Y.-Q. Li, "Singleacquisition 2D multifocal Raman spectroscopy using compressive sensing," Anal. Chem. 92(1), 1326– 1332 (2020).

    [26] P. Zhang, G. Wang, S. Huang, "Parallel micro- Raman spectroscopy of multiple cells in a single acquisition using hierarchical sparsity," Analyst 145(18), 6032–6037 (2020).

    [27] H. Riemann, Z. J. Ordal, "Germination of bacterial endospores with calcium and dipicoliniic acid," Science 133(3465), 1703–1704 (1961).

    [28] K. Ragkousi, P. Eichenberger, C. Van Ooij, P. Setlow, "Identification of a new gene essential for germination of Bacillus subtilis spores with Ca2t- dipicolinate," J. Bacteriol. 185(7), 2315–2329 (2003).

    [29] A. Perez-Valdespino, S. Ghosh, E. Cammett, L. Kong, Y. Q. Li, P. Setlow, "Isolation and characterization of B acillus subtilis spores that are superdormant for germination with dodecylamine or Ca2t-dipicolinic acid," J. Appl. Microbiol. 114(4), 1109–1119 (2013).

    [30] S. J. Wright, R. D. Nowak, M. A. Figueiredo, "Sparse reconstruction by separable approximation," IEEE Trans. Signal Process. 57(7), 2479– 2493 (2009).

    [31] P. Sprechmann, I. Ramirez, G. Sapiro, Y. C. Eldar, "C-HiLasso: A collaborative hierarchical sparse modeling framework," IEEE Trans. Signal Process. 59(9), 4183–4198 (2011).

    [32] D. P. Bertsekas, J. N. Tsitsiklis, Parallel and Distributed Computation: Numerical Methods, Vol. 23, Prentice HallEnglewood Cli?s, NJ (1989).

    [33] P. Zhang, L. Kong, P. Setlow, Y.-Q. Li, "Characterization of wet-heat inactivation of single spores of Bacillus species by dual-trap Raman spectroscopy and elastic light scattering," Appl. Environ. Microbiol. 76(6), 1796–1805 (2010).

    [34] C. Xie, D. Chen, Y.-Q. Li, "Raman sorting and identification of single living micro-organisms with optical tweezers," Opt. Lett. 30(14), 1800–1802 (2005).

    [35] P. Zhang, L. Kong, G. Wang, P. Setlow, Y.-Q. Li, "Combination of Raman tweezers and quantitative differential interference contrast microscopy for measurement of dynamics and heterogeneity during the germination of individual bacterial spores," J. Biomed. Opt. 15(5), 056010 (2010).

    [36] L. Kong, P. Zhang, P. Setlow, Y.-Q. Li, "Multifocus confocal Raman microspectroscopy for rapid singleparticle analysis," J. Biomed. Opt. 16(12), 120503 (2011).

    Zhenzhen Li, Xiujuan Zhang, Chengui Xiao, Da Chen, Shushi Huang, Pengfei Zhang, Guiwen Wang. Combination of multi-focus Raman spectroscopy and compressive sensing for parallel monitoring of single-cell dynamics[J]. Journal of Innovative Optical Health Sciences, 2021, 14(6): 2150021
    Download Citation