Spectral gain induced by four-wave-mixing with multi-frequency pump was investigated by exploiting the data signal and continue lights co-propagation in dispersion flattened high nonlinear photonic crystal fiber (PCF). The effects of wavelength drift of pump lights, polarization state of orthogonal or parallel of pump lights, polarization mismatch of signal light versus orthogonal pump lights, total power of signal and probe light on the spectrum gain were analyzed. The results show that good FWM gain effects with multi-frequency pump can be obtained in 36.4 nm wavelength range when power ratio of pump to probe light is appropriate and with identical polarization. Furthermore, the gain of FWM with multi-frequency pump is very sensitive to polarization fluctuation and the different idle waves obtain different gain with the variation in signal polarization state. Moreover, the impact of pump numbers was investigated. The obtained results would be helpful for further research on ultrahigh-speed all optical signal processing devices exploiting the FWM with multi-frequency pump in PCF for future photonics network.