In the diagnosis of severe contagious diseases such as Ebola, severe acute respiratory syndrome, and COVID-19, there is an urgent need for protein sensors with large refractive index sensitivities. Current terahertz metamaterials cannot be used to develop such protein sensors due to their low refractive index sensitivities. A simple method is proposed that is compatible with all geometrical structures of terahertz metamaterials to increase their refractive index sensitivities. This method uses patterned photoresist to float the split-ring resonators (SRRs) of a terahertz metamaterial at a height of 30 μm from its substrate that is deposited with complementary SRRs. The floating terahertz metamaterial has an extremely large refractive index sensitivity of 532 GHz/RIU because its near field is not distributed over the substrate and also because the complementary SRRs confine the field above the substrate. The floating terahertz metamaterial senses bovine serum albumin (BSA) and the protein binding of BSA and anti-BSA as BSA, and anti-BSA solutions with low concentrations that are smaller than 0.150 μmol/L are sequentially dropped onto it. The floating terahertz metamaterial is a great achievement to develop protein sensors with extremely large refractive index sensitivities, and has the potential to sense dangerous viruses.