Integrated nonlinear waveguide structures enable generation of quantum entangled photons. We describe theoretically the effects of spatially inhomogeneous loss on the creation of photon pairs through spontaneous parametric down-conversion in quadratically nonlinear directional couplers, where photons experience effective parity-time (PT) symmetric potential due to the presence of optical loss in one of the waveguides. We show that for losses below the PT-breaking threshold, the quantum photon states can be flexibly tuned similarly to conservative couplers, whereas for stronger losses, the correlations between two waveguide modes are suppressed. We also formulate a quantum-classical correspondence with sum-frequency generation for fast evaluation of device performance. These results can be applied for the design of quantum plasmonic circuits.