[1] E. A. Ash, G. Nicholls, “Super-resolution aperture scanning microscope,” Nature 237, 510-512 (1972).
[2] E. Betzig, J. K. Trautman, “Near-field optics: Microscopy, spectroscopy, and surface modification beyond the diffraction limit,” Science 257 :189-95 (1992).
[3] B. Bailey, D. L. Farkas, D. L. Taylor et al., “Enhancement of axial resolution in fluorescence microscopy by standing-wave excitation,” Nature 366, 44-48 (1993).
[4] S. W. Hell, E. H. Stelzer, S. Lindek et al., “Confocal microscopy with an increased detection aperture: Type-B 4Pi confocal microscopy,” Opt. Lett. 19, 222 (1994).
[5] M. G. Gustafsson, D. A. Agard, J. W. Sedat, “I5M: 3D widefield light microscopy with better than 100 nm axial resolution,” J. Microsc. 195, 10-16 (1999).
[6] S. W. Hell, J. Wichmann, “Breaking the diffraction resolution limit by stimulated emission: Stimulated-emission-depletion fluorescence microscopy,” Opt. Lett. 19, 780-782 (1994).
[7] R. Heintzmann, T. M. Jovin, C. Cremer, “Saturated patterned excitation microscopy-a concept for optical resolution improvement.” J Opt Soc Am A Opt Image Sci Vis. 19 :1599-609 (2002).
[8] M. G. Gustafsson, “Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution,” Proc. Natl. Acad. Sci. USA 102, 13081-13086 (2005).
[9] E. Betzig, G. H. Patterson, R. Sougrat et al., “Imaging intracellular fluorescent proteins at nanometer resolution,” Science 313, 1642-1645 (2006).
[10] S. T. Hess, T. P. Girirajan, M. D. Mason, “Ultra-high resolution imaging by fluorescence photoactivation localization microscopy,” Biophys. J. 91, 4258-4272 (2006).
[11] M. J. Rust, M. Bates, X. Zhuang, “Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).” Nat. Methods. 3, 793-795 (2006).
[12] D. Axelrod, “Total internal reflection fluorescence microscopy in cell biology,” Traffic. 2, 764-774 (2001).
[13] S. M. Simon, “Partial internal reflections on total internal reflection fluorescent microscopy,” Trends. Cell. Biol. 19, 661-668 (2009).
[14] D. Yarar, C. M. Waterman-Storer, S. L. Schmid, “A dynamic actin cytoskeleton functions at multiple stages of clathrin-mediated endocytosis,” Mol. Biol. Cell. 16, 964-975 (2005).
[15] J. Z. Rappoport, “Focusing on clathrin-mediated endocytosis,” Biochem. J. 412, 415-423 (2008).
[16] J. Z. Rappoport, S. M. Simon, “Endocytic trafficking of activated EGFR is AP-2 dependent and occurs through preformed clathrin spots,” J. Cell. Sci. 122, 1301-1305 (2009).
[17] T. Yuan, L. Liu, Y. Zhang et al., “Diacylglycerol guides the hopping of clathrin-coated pits along microtubules for exo-endocytosis coupling,” Dev Cell. 35, 120-130 (2015).
[18] J. Boulanger, C. Gueudry, D. Munch et al., “Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging,” Proc. Natl. Acad. Sci. USA 111, 17164-171649 (2014).
[19] D. Li, K. Herault, K. Zylbersztejn et al., “Astrocyte VAMP3 vesicles undergo Ca2+ -independent cycling and modulate glutamate transporter trafficking,” J. Physiol. 593, 2807-2832 (2015).
[20] S. Saffarian, T. Kirchhausen, “Differential evanescence nanometry: Live-cell fluorescence measurements with 10-nm axial resolution on the plasma membrane,” Biophys. J. 94, 2333-2342 (2008).
[21] W. T. Pitkeathly, N. S. Poulter, E. Claridge et al., “Auto-align — multi-modality fluorescence microscopy image co-registration,” Traffic. 13, 204-217 (2012).
[22] T. A. Klar, S. W. Hell, “Subdiffraction resolution in far-field fluorescence microscopy,” Opt. Lett. 24, 954-956 (1999).
[23] T. Grotjohann, I. Testa, M. Leutenegger et al., “Diffraction-unlimited all-optical imaging and writing with a photochromic GFP,” Nature 478, 204-208 (2011).
[24] R. J. Marsh, S. Culley, A. J. Bain, “Low power super resolution fluorescence microscopy by lifetime modification and image reconstruction,” Opt. Express. 22, 12327-12338 (2014).
[25] C. F. Kuang, S. Li, W. Liu et al., “Breaking the diffraction barrier using fluorescence emission difference microscopy.” Sci. Rep. 3, (2013).
[26] W. Yu, Z. Ji, D. Dong, X. Yang, Y. Xiao, Q. Gong, P. Xi, K. Shi, “Super-resolution deep imaging with hollow Bessel beam STED microscopy,” Laser Photon. Rev. 10, 147-152 (2016).
[27] X. Yang, H. Xie, E. Alonas et al., “Mirror-enhanced super-resolution microscopy,” Light Sci Appl. 5, (2016).
[28] K. I. Willig, R. R. Kellner, R. Medda et al., “Nanoscale resolution in GFP-based microscopy,” Nat. Methods. 3, 721-723 (2006).
[29] M. Ishigaki, M. Iketani, M. Sugaya et al., “STED super-resolution imaging of mitochondria labeled with TMRM in living cells,” Mitochondrion 28, 79-87 (2016).
[30] D. C. Jans, C. A. Wurm, D. Riedel et al., “STED super-resolution microscopy reveals an array of MINOS clusters along human mitochondria,” Proc. Natl. Acad. Sci. USA 110, 8936-8941 (2013).
[31] E. D’Este, D. Kamin, C. Velte et al., “Subcortical cytoskeleton periodicity throughout the nervous system,” Sci. Rep. 6, 22741 (2016).
[32] E. D’Este, D. Kamin, F. Gottfert et al., “STED nanoscopy reveals the ubiquity of subcortical cytoskeleton periodicity in living neurons,” Cell Rep. 10, 1246-1251 (2015).
[33] H. Nishimune, Y. Badawi, S. Mori et al., “Dual-color STED microscopy reveals a sandwich structure of Bassoon and Piccolo in active zones of adult and aged mice,” Sci. Rep. 6, 27935 (2016).
[34] F. Bottanelli, E. B. Kromann, E. S. Allgeyer et al., “Two-colour live-cell nanoscale imaging of intracellular targets.” Nat. Commun. 7, 10778 (2016).
[35] L. Meyer, D. Wildanger, R. Medda et al., “Dual-color STED microscopy at 30-nm focal-plane resolution,” Small. 4, 1095-1100 (2008).
[36] S. C. Sidenstein, E. D’Este, M. J. Bohm et al., “Multicolour Multilevel STED nanoscopy of Actin/Spectrin Organization at Synapses,” Sci Rep. 6, 26725 (2016).
[37] J. Buckers, D. Wildanger, G. Vicidomini et al., “Simultaneous multi-lifetime multi-color STED imaging for colocalization analyses,” Opt. Express. 19, 3130-3143 (2011).
[38] D. Wildanger, R. Medda, L. Kastrup et al., “A compact STED microscope providing 3D nanoscale resolution,” J. Microsc. 236, 35-43 (2009).
[39] Y. Wu, X. Wu, R. Lu et al., “Resonant scanning with large field of view reduces photobleaching and enhances fluorescence yield in STED microscopy,” Sci. Rep. 5, 14766 (2015).
[40] D. Dan, M. Lei, B. Yao et al., “DMD-based LED-illumination super-resolution and optical sectioning microscopy,” Sci. Rep. 3, 1116 (2013).
[41] E. H. Rego, L. Shao, J. J. Macklin et al., “Nonlinear structured-illumination microscopy with a photoswitchable protein reveals cellular structures at 50-nm resolution,” Proc. Natl. Acad. Sci. USA 109, E135-E143 (2012).
[42] D. Li, L. Shao, B. C. Chen et al., “Advanced Imaging. Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics,” Science 349, aab3500 (2015).
[43] H. Gong, D. Xu, J. Yuan et al., “High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level,” Nat. Commun. 7, 12142 (2016).
[44] C. Li, H. Yan, L. X. Zhao et al., “A trident dithienylethene-perylenemonoimide dyad with super fluorescence switching speed and ratio,” Nat. Commun. 5, 5709 (2014).
[45] D. Pan, Z. Hu, F. Qiu et al., “A general strategy for developing cell-permeable photo-modulatable organic fluorescent probes for live-cell super-resolution imaging,” Nat. Commun. 5, 5573 (2014).
[46] B. Huang, W. Wang, M. Bates et al., “Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy,” Science 319, 810-813 (2008).
[47] A. N. Boettiger, B. Bintu, J. R. Moffitt et al., “Super-resolution imaging reveals distinct chromatin folding for different epigenetic states,” Nature 529, 418-422 (2016).
[48] M. Lakadamyali, “Super-resolution microscopy: Going live and going fast,” Chemphyschem 15, 630-636 (2014).
[49] Z. Liu, D. Xing, Q. P. Su et al., “Super-resolution imaging and tracking of protein-protein interactions in sub-diffraction cellular space,” Nat. Commun. 5, 4443 (2014).
[50] M. Bates, S. A. Jones, X. Zhuang, “Preparation of photoswitchable labeled antibodies for STORM imaging,” Cold Spring Harb Protoc. 2013, 540-541 (2013).
[51] M. Bates, S. A. Jones, X. Zhuang, “Transfection of genetically encoded photoswitchable probes for STORM imaging,” Cold Spring Harb Protoc. 2013, 537-539 (2013).
[52] L. Zhu, W. Zhang, D. Elnatan et al., “Faster STORM using compressed sensing,” Nat. Methods. 9, 721-723 (2012).
[53] F. Mark, W. Barry, A. P. Michael, Neuroscience: Exploring the Brain, Nishimura Co. Ltd., Japan, pp. 144-152 (2007).
[54] K. I. Willig, S. O. Rizzoli, V. Westphal et al., “STED microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis,” Nature 440, 935-939 (2006).
[55] J. J. Sieber, K. I. Willig, C. Kutzner et al., “Anatomy and dynamics of a supramolecular membrane protein cluster,” Science 317, 1072-1076 (2007).
[56] V. Westphal, S. O. Rizzoli, M. A. Lauterbach et al., “Video-rate far-field optical nanoscopy dissects synaptic vesicle movement,” Science 320, 246-249 (2008).
[57] S. Nofal, U. Becherer, D. Hof et al., “Primed vesicles can be distinguished from docked vesicles by analyzing their mobility,” J. Neurosci. 27, 1386-1395 (2007).
[58] Y. Gu, R. L. Huganir, “Identification of the SNARE complex mediating the exocytosis of NMDA receptors,” Proc. Natl. Acad. Sci. USA 113, 12280-12285 (2016).
[59] U. V. Nagerl, K. I. Willig, B. Hein et al., “Live-cell imaging of dendritic spines by STED microscopy,” Proc. Natl. Acad. Sci. USA 105, 18982-18987 (2008).
[60] M. Schouten, G. M. De Luca, D. K. Alatriste Gonzalez et al., “Imaging dendritic spines of rat primary hippocampal neurons using structured illumination microscopy,” J. Vis. Exp. (2014).
[61] G. Zhong, J. He, R. Zhou et al., “Developmental mechanism of the periodic membrane skeleton in axons,” Elife. 3, (2014).
[62] K. Xu, G. Zhong, X. Zhuang, “Actin, spectrin, and associated proteins form a periodic cytoskeletal structure in axons,” Science 339, 452-456 (2013).
[63] K. Zhanghao, L. Chen, X. Yang et al., “Super-resolution dipole orientation mapping via polarization demodulation,” Nature 5, e16166 (2016).
[64] K. Wang, D. E. Milkie, A. Saxena et al., “Rapid adaptive optical recovery of optimal resolution over large volumes,” Nat. Methods. 11, 625-628 (2014).
[65] K. Si, R. Fiolka, M. Cui, “Fluorescence imaging beyond the ballistic regime by ultrasound pulse guided digital phase conjugation,” Nat. Photonics. 6, 657-661 (2012).
[66] N. Ji, D. E. Milkie, E. Betzig, “Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues,” Nat. Methods. 7, 141-147 (2010).
[67] K. Xu, H. P. Babcock, X. Zhuang, “Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton,” Nat. Methods. 9, 185-188 (2012).
[68] J. H. Resau, Handbook of Biological Confocal Microscopy, Springer, US (2006).
[69] P. Kner, B. B. Chhun, E. R. Griffis et al., “Super-resolution video microscopy of live cells by structured illumination,” Nat. Methods. 6, 339-342 (2009).
[70] Y. Fu, P. W. Winter, R. Rojas et al., “Axial superresolution via multiangle TIRF microscopy with sequential imaging and photobleaching,” Proc. Natl. Acad. Sci. USA 113, 4368-4373 (2016).