• Journal of Innovative Optical Health Sciences
  • Vol. 14, Issue 1, 2130001 (2021)
Huakun Li, Kaiyuan Liu, Lin Yao, Xiaofeng Deng, Ziyi Zhang, and Peng Li*
Author Affiliations
  • State Key Laboratory of Modern Optical Instrumentation College of Optical Science and Engineering, Zhejiang University Hangzhou, Zhejiang 310027, P. R. China
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    DOI: 10.1142/s1793545821300019 Cite this Article
    Huakun Li, Kaiyuan Liu, Lin Yao, Xiaofeng Deng, Ziyi Zhang, Peng Li. ID-OCTA: OCT angiography based on inverse SNR and decorrelation features[J]. Journal of Innovative Optical Health Sciences, 2021, 14(1): 2130001 Copy Citation Text show less
    References

    [1] D. Huang et al., "Optical coherence tomography," Science 254(5035), 1178–1181 (1991).

    [2] P. H. Tomlins, R. K. Wang, "Theory, developments and applications of optical coherence tomography," J. Phys. D, Appl. Phys. 38(15), 2519–2535 (2005).

    [3] A. Zhang et al., "Methods and algorithms for optical coherence tomography-based angiography: A review and comparison," J. Biomed. Opt. 20(10), 100901 (2015).

    [4] S. S. Gao et al., "Optical coherence tomography angiography," Invest. Ophthalmol. Vis. Sci. 57(9), OCT27–OCT36 (2016).

    [5] A. H. Kashani et al., "Optical coherence tomography angiography: A comprehensive review of current methods and clinical applications," Prog. Retin. Eye Res. 60, 66–100 (2017).

    [6] F. Xing et al., "Three-dimensional imaging of spatio- temporal dynamics of small blood capillary network in the cortex based on optical coherence tomography: A review," J. Innov. Opt. Health Sci. 13(01), 2030002 (2019).

    [7] C. L. Chen, R. K. Wang, "Optical coherence tomography based angiography [Invited]," Biomed. Opt. Express 8(2), 1056–1082 (2017).

    [8] Y. Jia et al., "Quantitative optical coherence tomography angiography of choroidal neovascularization in age-related macular degeneration," Ophthalmology 121(7), 1435–1444 (2014).

    [9] Z. Chu et al., "Quantitative assessment of the retinal microvasculature using optical coherence tomography angiography," J. Biomed. Opt. 21(6), 066008 (2016).

    [10] K. V. Chalam, K. Sambhav, "Optical coherence tomography angiography in retinal diseases," J. Ophthalmic Vis. Res. 11(1), 84–92 (2016).

    [11] L. Roisman et al., "Optical coherence tomography angiography of asymptomatic neovascularization in intermediate age-related macular degeneration," Ophthalmology 123(6), 1309–1319 (2016).

    [12] Y. M. Liew et al., "In vivo assessment of human burn scars through automated quantification of vascularity using optical coherence tomography," J. Biomed. Opt. 18(6), 069801 (2012).

    [13] U. Baran, W. J. Choi, R. K. Wang, "Potential use of OCT-based microangiography in clinical dermatology," Skin Res. Technol. 22(2), 238–246 (2016).

    [14] M. Ulrich et al., "Dynamic optical coherence tomography in dermatology," Dermatology 232(3), 298–311 (2016).

    [15] U. Baran, R. K. Wang, "Review of optical coherence tomography based angiography in neuroscience," Neurophotonics 3(1), 010902 (2016).

    [16] P. Shin et al., "Quantitative hemodynamic analysis of cerebral blood flow and neurovascular coupling using optical coherence tomography angiography," J. Cereb. Blood Flow Metab. 39(10), 1983–1994 (2019).

    [17] Y. Jia, P. Li, R. K. Wang, "Optical microangiography provides an ability to monitor responses of cerebral microcirculation to hypoxia and hyperoxia in mice," J. Biomed. Opt. 16(9), 096019 (2011).

    [18] Y. Jia, R. K. Wang, "Label-free in vivo optical imaging of functional microcirculations within meninges and cortex in mice," J. Neurosci. Methods 194 (1), 108–115 (2010).

    [19] S. Yang et al., "Longitudinal in vivo intrinsic optical imaging of cortical blood perfusion and tissue damage in focal photothrombosis stroke model," J. Cereb. Blood Flow Metab. 39(7), 1381–1393 (2019).

    [20] S. Yang et al., "Correlation of optical attenuation coefficient estimated using optical coherence tomography with changes in astrocytes and neurons in a chronic photothrombosis stroke model," Biomed. Opt. Express 10(12), 6258–6271 (2019).

    [21] S. Yang et al., "In vivo mice brain microcirculation monitoring based on contrast-enhanced SD-OCT," J. Innov. Opt. Health Sci. 12(01), 1950001 (2019).

    [22] B. J. Vakoc et al., "Three-dimensional microscopy of the tumor microenvironment in vivo using optical frequency domain imaging," Nat. Med. 15(10), 1219–1223 (2009).

    [23] P. Li et al., "Hybrid averaging offers high-flow contrast by cost apportionment among imaging time, axial, and lateral resolution in optical coherence tomography angiography," Opt. Lett. 41(17), 3944– 3947 (2016).

    [24] R. Motaghiannezam, S. Fraser, "Logarithmic intensity and speckle-based motion contrast methods for human retinal vasculature visualization using swept source optical coherence tomography," Biomed. Opt. Express 3(3), 503–521 (2012).

    [25] Y. Cheng et al., "Statistical analysis of motion contrast in optical coherence tomography angiography," J. Biomed. Opt. 20(11), 116004 (2015).

    [26] J. W. Goodman, Statistical Optics, John Wiley & Sons, New York (1985).

    [27] S. Makita et al., "Optical coherence angiography," Opt. Express 14(17), 7821–7840 (2006).

    [28] J. Fingler et al., "Mobility and transverse flow visualization using phase variance contrast with spectral domain optical coherence tomography," Opt. Express 15(20), 12636–12653 (2007).

    [29] A. Mariampillai et al., "Speckle variance detection of microvasculature using swept-source optical coherence tomography," Opt. Lett. 33(13), 1530–1532 (2008).

    [30] J. Enfield, E. Jonathan, M. Leahy, "In vivo imaging of the microcirculation of the volar forearm using correlation mapping optical coherence tomography (cmOCT)," Biomed. Opt. Express 2(5), 1184–1193 (2011).

    [31] Y. Jia et al., "Split-spectrum amplitude-decorrelation angiography with optical coherence tomography," Opt. Express 20(4), 4710–4725 (2012).

    [32] P. Li et al., "Single-shot angular compounded optical coherence tomography angiography by splitting full-space B-scan modulation spectrum for flow contrast enhancement," Opt. Lett. 41(5), 1058–1061 (2016).

    [33] L. Guo et al., "Improved motion contrast and processing efficiency in OCT angiography using complex-correlation algorithm," J. Opt. 18(2), 025301 (2016).

    [34] J. Xu et al., "Complex-based OCT angiography algorithm recovers microvascular information better than amplitude- or phase-based algorithms in phasestable systems," Phys. Med. Biol. 63(1), 015023 (2017).

    [35] R. K. Wang et al., "Three dimensional optical angiography," Opt. Express 15(7), 4083–4097 (2007).

    [36] W. J. Choi et al., "Improved microcirculation imaging of human skin in vivo using optical microangiography with a correlation mapping mask," J. Biomed. Opt. 19(3), 036010 (2014).

    [37] N. Uribe-Patarroyo, M. Villiger, B. E. Bouma, "Quantitative technique for robust and noise-tolerant speedmeasurements based on speckle decorrelation in optical coherence tomography," Opt. Express 22(20), 24411–24429 (2014).

    [38] P. Li, P. Li, "Mass sample optical coherence tomography angiography technology and application," Chin. J. Lasers 45(3), 0307001 (2018).

    [39] J. Tokayer et al., "Blood flow velocity quantification using split-spectrum amplitude-decorrelation angiography with optical coherence tomography," Biomed. Opt. Express 4(10), 1909–1924 (2013).

    [40] R. K. Wang et al., "Optical coherence tomography angiography-based capillary velocimetry," J. Biomed. Opt. 22(6), 066008 (2017).

    [41] E. D. Cole et al., "The definition, rationale, and effects of thresholding in OCT angiography," Ophthalmol. Retina 1(5), 435–447 (2017).

    [42] S. Makita et al., "Noise-immune complex correlation for optical coherence angiography based on standard and Jones matrix optical coherence tomography," Biomed. Opt. Express 7(4), 1525– 1548 (2016).

    [43] B. Braaf et al., "Complex differential variance angiography with noise-bias correction for optical coherence tomography of the retina," Biomed. Opt. Express 9(2), 486–506 (2018).

    [44] A. Zhang, R. K. Wang, "Feature space optical coherence tomography based micro-angiography," Biomed. Opt. Express 6(5), 1919–1928 (2015).

    [45] S. S. Gao et al., "Compensation for reflectance variation in vessel density quantification by optical coherence tomography angiography," Invest. Ophthalmol. Vis. Sci. 57(10), 4485–4492 (2016).

    [46] P. Li et al., "Adaptive classifier allows enhanced flow contrast in OCT angiography using a histogram- based motion threshold and 3D Hessian analysis- based shape filtering," Opt. Lett. 42(23), 4816– 4819 (2017).

    [47] L. Huang et al., "SNR-adaptive OCT angiography enabled by statistical characterization of intensity and decorrelation with multi-variate time series model," IEEE Trans. Med. Imaging 38(11), 2695– 2704 (2019).

    [48] M. Chlebiej et al., "Quality improvement of OCT angiograms with elliptical directional filtering," Biomed. Opt. Express 10(2), 1013–1031 (2019).

    [49] H. C. Hendargo et al., "Automated non-rigid registration and mosaicing for robust imaging of distinct retinal capillary beds using speckle variance optical coherence tomography," Biomed. Opt. Express 4(6), 803–821 (2013).

    [50] A. F. Frangi et al., Multiscale vessel enhancement filtering, MICCAI 1998: Medical Image Computing and Computer-Assisted Intervention, W. M. Wells, A. Colchester, S. Delp, Eds., Lecture Notes in Computer Science, Vol. 1496, pp. 130–137, Springer, Berlin (1998).

    [51] J. Lee et al., "Statistical intensity variation analysis for rapid volumetric imaging of capillary network flux," Biomed. Opt. Express 5(4), 1160– 1172 (2014).

    [52] S. Yousefi et al., "Label-free optical lymphangiography: development of an automatic segmentation method applied to optical coherence tomography to visualize lymphatic vessels using Hessian filters," J. Biomed. Opt. 18(8), 086004 (2013).

    [53] S. Yousefi, T. Liu, R. K. Wang, "Segmentation and quantification of blood vessels for OCT-based microangiograms using hybrid shape/intensity compounding," Microvasc. Res. 97, 37–46 (2015).

    [54] A. Li et al., "Automated segmentation and quanti fication of OCT angiography for tracking angiogenesis progression," Biomed. Opt. Express 8(12), 5604–5616 (2017).

    [55] Y. Jia et al., "Quantitative OCT angiography of optic nerve head blood flow," Biomed. Opt. Express 3(12), 3127–3137 (2012).

    [56] Z. Burgansky-Eliash et al., "Retinal blood flow velocity in patients with age-related macular degeneration," Curr. Eye Res. 39(3), 304–311 (2014).

    [57] Y. Jia et al., "Quantitative optical coherence tomography angiography of vascular abnormalities in the living human eye," Proc. Natl Acad Sci USA 112(18), E2395–E2402 (2015).

    [58] D. Richter et al., "Relative retinal flow velocity detection using optical coherence tomography angiography imaging," Biomed. Opt. Express 11(11), 6710–6720 (2020).

    [59] D. Attwell et al., "Glial and neuronal control of brain blood flow," Nature 468(7321), 232–243 (2010).

    [60] W. J. Choi et al., "Cerebral capillary velocimetry based on temporal OCT speckle contrast," Biomed. Opt. Express 7(12), 4859–4873 (2016).

    [61] V. J. Srinivasan et al., "OCT methods for capillary velocimetry," Biomed. Opt. Express 3(3), 612–629 (2012).

    [62] J. P. Su et al., "Calibration of optical coherence tomography angiography with a microfluidic chip," J. Biomed. Opt. 21(8), 086015 (2016).

    [63] G. Liu et al., "High-resolution imaging of microvasculature in human skin in-vivo with optical coherence tomography," Opt. Express 20(7), 7694– 7705 (2012).

    [64] W. Choi et al., "Ultrahigh-speed, swept-source optical coherence tomography angiography in nonexudative age-related macular degeneration with geographic atrophy," Ophthalmology 122(12), 2532–2544 (2015).

    [65] S. B. Ploner et al., "Toward quantitative optical coherence tomography angiography: Visualizing blood flow speeds in ocular pathology using variable interscan time analysis," Retina 36(Suppl. 1), S118– S126 (2016).

    [66] M. G. O. Grafe, M. Gondre, J. F. de Boer, "Precision analysis and optimization in phase decorrelation OCT velocimetry," Biomed. Opt. Express 10(3), 1297–1314 (2019).

    [67] M. G. O. Grafe, O. Nadiarnykh, J. F. de Boer, "Optical coherence tomography velocimetry based on decorrelation estimation of phasor pair ratios (DEPPAIR)," Biomed. Opt. Express 10(11), 5470– 5485 (2019).

    [68] R. Chen et al., "Improvement of decorrelationbased OCT angiography by an adaptive spatialtemporal kernel in monitoring stimulus-evoked hemodynamic responses," IEEE Trans. Med. Imaging 39(12), 4286–4296 (2020).

    [69] H. Wang, A. M. Rollins, "Speckle reduction in optical coherence tomography using angular compounding by B-scan Doppler-shift encoding," J. Biomed. Opt. 14(3), 030512 (2009).

    [70] R. Uma Maheswari et al., "Implementation of optical coherence tomography (OCT) in visualization of functional structures of cat visual cortex," Opt. Commun. 202(1–3), 47–54 (2002).

    [71] R. Uma Maheswari et al., "Novel functional imaging technique from brain surface with optical coherence tomography enabling visualization of depth resolved functional structure in vivo," J. Neuroscience Methods 124(1), 83–92 (2003).

    [72] U. M. Rajagopalan, M. Tanifuji, "Functional optical coherence tomography reveals localized layer-speci fic activations in cat primary visual cortexin vivo," Opt. Lett. 32(17), 2614–2616 (2007).

    [73] A. D. Aguirre et al., "Depth-resolved imaging of functional activation in the rat cerebral cortex using optical coherence tomography," Opt. Lett. 31(23), 3459–3461 (2006).

    [74] Y. Chen et al., "Optical coherence tomography (OCT) reveals depth-resolved dynamics during functional brain activation," J. Neurosci. Methods 178(1), 162–173 (2009).

    [75] J. Wells et al., "Optical stimulation of neural tissuein vivo," Opt. Lett. 30(5), 504–506 (2005).

    [76] C. P. Richter et al., "Neural stimulation with optical radiation," Laser Photon. Rev. 5(1), 68–80 (2011).

    [77] Y. Zhang et al., "INS-fOCT: A label-free, all-optical method for simultaneously manipulating and mapping brain function," Neurophotonics 7(1), 015014 (2020).

    [78] R. A. Stepnoski et al., "Noninvasive detection of changes in membrane potential in cultured neurons by light scattering," Proc. Natl. Acad. Sci. USA 88 (21), 9382–9386 (1991).

    [79] A. Urban et al., "Chronic assessment of cerebral hemodynamics during rat forepaw electrical stimulation using functional ultrasound imaging," Neuroimage 101, 138–149 (2014).

    [80] T. Matsuura et al., "CBF change evoked by somatosensory activation measured by laser-Doppler flowmetry: independent evaluation of RBC velocity and RBC concentration," Jpn. J. Physiol. 49(3), 289–296 (1999).

    Huakun Li, Kaiyuan Liu, Lin Yao, Xiaofeng Deng, Ziyi Zhang, Peng Li. ID-OCTA: OCT angiography based on inverse SNR and decorrelation features[J]. Journal of Innovative Optical Health Sciences, 2021, 14(1): 2130001
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