• Chinese Journal of Lasers
  • Vol. 48, Issue 13, 1307001 (2021)
Tianqi Wu1、2, Wen Xiao1、2, Renjian Li1、2, Yizhi Xu1、2, Xuejuan Hu2、3, and Lingling Chen1、2、3、*
Author Affiliations
  • 1College of Health Science and Environmental Engineering, Shenzhen Technology University, Shenzhen, Guangdong 518118, China
  • 2College of Physics and Optoelectronic Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China
  • 3Key Laboratory of Advanced Optical Precision Manufacturing Technology of Guangdong Provincial Higher Education Institute, Shenzhen, Guangdong 518118, China
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    DOI: 10.3788/CJL202148.1307001 Cite this Article Set citation alerts
    Tianqi Wu, Wen Xiao, Renjian Li, Yizhi Xu, Xuejuan Hu, Lingling Chen. Single-Molecule Localization Image Background Denoising Based on Time-Domain Iterative Wavelet Transform[J]. Chinese Journal of Lasers, 2021, 48(13): 1307001 Copy Citation Text show less
    References

    [1] Betzig E, Patterson G H, Sougrat R et al. Imaging intracellular fluorescent proteins at nanometer resolution[J]. Science, 313, 1642-1645(2006).

    [2] Rust M J, Bates M, Zhuang X. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)[J]. Nature Methods, 3, 793-795(2006).

    [3] Hell S W, Wichmann J. Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy[J]. Optics Letters, 19, 780-782(1994). http://www.opticsinfobase.org/ol/abstract.cfm?uri=ol-19-11-780

    [4] Min J, Vonesch C, Kirshner H et al. FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data[J]. Scientific Reports, 4, 4577(2014). http://www.ncbi.nlm.nih.gov/pubmed/24694686

    [5] Holden S J, Uphoff S, Kapanidis A N. DAOSTORM: an algorithm for high-density super-resolution microscopy[J]. Nature Methods, 8, 279-280(2011). http://www.europepmc.org/abstract/MED/21451515

    [6] Brede N, Lakadamyali M. GraspJ: an open source, real-time analysis package for super-resolution imaging[J]. Optical Nanoscopy, 1, 1-7(2012).

    [7] Ovesný M, Křížek P, Borkovec J et al. ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging[J]. Bioinformatics, 30, 2389-2390(2014).

    [8] Ma H, Xu J, Liu Y. WindSTORM: robust online image processing for high-throughput nanoscopy[J]. Science Advances, 5, eaaw0683(2019).

    [9] Henriques R, Lelek M, Fornasiero E F et al. QuickPALM: 3D real-time photoactivation nanoscopy image processing in Image[J]. Nature Methods, 7, 339-340(2010). http://europepmc.org/abstract/MED/20431545

    [10] Hoogendoorn E, Crosby K C, Leyton-Puig D et al. The fidelity of stochastic single-molecule super-resolution reconstructions critically depends upon robust background estimation[J]. Scientific Reports, 4, 3854(2014). http://www.nature.com/articles/srep03854

    [11] Ma H Q, Jiang W, Xu J Q et al. Enhanced super-resolution microscopy by extreme value-based emitter recovery[EB/OL]. (2018-04-05)[2020-11-25]. https://www.biorxiv.org/content/10.1101/295261v1.article-metrics

    [12] Lin H, Guo S X, Zhao W et al. Wavelet transform for evaluation of semiconductor laser reliability[J]. Chinese Journal of Lasers, 31, 1050-1054(2004).

    [13] Zhang C X, Chen M H, Wang F et al. Optical coherence tomography image denoising algorithm based on wavelet transform and fractional integral[J]. Laser & Optoelectronics Progress, 56, 181008(2019).

    [14] Li Y S, Wu C K, Chen J et al. Spectral satellite image compression based on wavelet transform[J]. Acta Optica Sinica, 21, 691-695(2001).

    [15] Meng X, Liu L, Jiang S et al. Detection and revision of interference spectral signals based on wavelet transforms[J]. Acta Optica Sinica, 39, 0930007(2019).

    [16] Boggess A, Narcowich F J. A first course in wavelets with Fourier analysis[M]. Rui G S, Kang J, Transl. 2th ed, 182-183(2010).

    [17] Galloway C M, le Ru E C, Etchegoin P G. An iterative algorithm for background removal in spectroscopy by wavelet transforms[J]. Applied Spectroscopy, 63, 1370-1376(2009). http://www.opticsinfobase.org/abstract.cfm?uri=as-63-12-1370

    [18] Kubitscheck U, Kückmann O, Kues T et al. Imaging and tracking of single GFP molecules in solution[J]. Biophysical Journal, 78, 2170-2179(2000). http://www.ncbi.nlm.nih.gov/pubmed/10733995

    [19] Huang T, Yang G, Tang G. A fast two-dimensional median filtering algorithm[J]. IEEE Transactions on Acoustics, Speech, and Signal Processing, 27, 13-18(1979). http://ieeexplore.ieee.org/abstract/document/1163188

    [20] Sternberg S R. Biomedical image processing[J]. Computer, 16, 22-34(1983).

    [21] Wang Z, Bovik A C, Sheikh H R et al. Image quality assessment: from error visibility to structural similarity[J]. IEEE Transactions on Image Processing, 13, 600-612(2004).

    [23] Xiao W, Wu T Q, Li R J et al. WindSTORM PLUS algorithm with parallel computing optimization[J]. Chinese Journal of Lasers, 47, 0607001(2020).

    Tianqi Wu, Wen Xiao, Renjian Li, Yizhi Xu, Xuejuan Hu, Lingling Chen. Single-Molecule Localization Image Background Denoising Based on Time-Domain Iterative Wavelet Transform[J]. Chinese Journal of Lasers, 2021, 48(13): 1307001
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